Merge's discussion on the importance of Model Context Protocol (MCP) server logs highlights their crucial role in monitoring AI agents, troubleshooting issues, and ensuring compliance with data protection regulations. These logs, which record tool calls executed by MCP servers, offer insights into tool usage, facilitate error handling, and provide an audit trail for security audits. Best practices for utilizing these logs include making them searchable, testing them thoroughly before deployment, setting up rules for suspicious activities, and outsourcing log management infrastructure to third-party solutions to reduce operational overhead. Merge Agent Handler offers tools and features to optimize these processes, ensuring that AI agents are both secure and effective in their operations.