Organizing and naming applications and libraries in a growing repository can be challenging, but when done right, it facilitates intuitive navigation and collaboration among team members. Poor organization leads to chaos often termed "legacy software." Strategies to prevent this include using tools like Nx, which offers the enforce-module-boundaries ESLint rule to maintain clear module boundaries and prevent unauthorized dependencies. Proper naming conventions and architectural guidelines, as discussed in resources like the book "Enterprise Angular Monorepo Patterns," are essential for any framework. Large projects typically involve multiple teams working on distinct domains, each with a public API for interaction. The use of tags for project categorization can help enforce boundaries, ensuring that projects only depend on designated libraries. Additionally, restrictions on external and transitive dependencies are crucial to maintaining code integrity and preventing vulnerabilities. While the default configuration provides a foundation, fine-tuning these settings is necessary to accommodate specific project needs, and occasionally, overrides may be necessary for testing or when a project's architecture is in flux.