Bit aims to streamline the installation of dependencies in the JavaScript ecosystem, which can sometimes require configuration adjustments due to its vastness. By default, Bit employs pnpm as its package manager with an isolated linker to maintain a clean node_modules structure, but users can switch to Yarn or a hoisted linker to accommodate tools like React Native that struggle with symlinks. The platform also allows users to override specific dependencies to address issues like vulnerabilities or deduplication, though these overrides are only effective during local development. While Bit currently suppresses peer dependency warnings with pnpm, it plans to enable them in the future, allowing users to opt-in or mute specific warnings using peerDependencyRules. These configurations ensure Bit's compatibility with various setups and help manage dependency challenges, leveraging the expertise of Zoltan, the creator of pnpm.